{ "_id": "6a250ca54b233be19838815e", "Package": "ecodist", "Version": "2.1.3", "Date": "2023-10-30", "Title": "Dissimilarity-Based Functions for Ecological Analysis", "Authors@R": "c(person(\"Sarah\", \"Goslee\", role = c(\"aut\", \"cre\"),\nemail = \"Sarah.Goslee@usda.gov\"),\nperson(\"Dean\", \"Urban\", role = \"aut\"))", "Author": "Sarah Goslee [aut, cre], Dean Urban [aut]", "Maintainer": "Sarah Goslee ", "LazyData": "true", "VignetteBuilder": "knitr", "Description": "Dissimilarity-based analysis functions including\nordination and Mantel test functions, intended for use with\nspatial and community ecological data. The original package\ndescription is in Goslee and Urban (2007)\n, with further statistical detail in\nGoslee (2010) .", "License": "GPL (>= 2)", "BugReports": "https://github.com/phiala/ecodist/issues", "Config/pak/sysreqs": "libglpk-dev libxml2-dev", "Repository": "https://phiala.r-universe.dev", "Date/Publication": "2023-10-30 13:16:12 UTC", "RemoteUrl": "https://github.com/phiala/ecodist", "RemoteRef": "HEAD", "RemoteSha": "aeac5854276f3a08d6cdb9b12e7183f3ef96c05b", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-06-07 06:11:20 UTC", "User": "root" }, "MD5sum": "9a7c37e9d82249a748fe219ee8e952cf", "_user": "phiala", "_type": "src", "_file": "ecodist_2.1.3.tar.gz", "_fileid": "4a11ba9385b178c8f6a10c0f12401bed4228760f0f4f0e26e971470dd678d5dd", "_filesize": 531218, "_sha256": "4a11ba9385b178c8f6a10c0f12401bed4228760f0f4f0e26e971470dd678d5dd", "_created": "2026-06-07T06:11:20.000Z", "_published": "2026-06-07T06:16:05.639Z", "_distro": "noble", "_jobs": [ { "job": 79936494782, "time": 122, "config": "linux-devel-arm64", "r": "4.7.0", "check": "OK", "artifact": "7461347594" }, { "job": 79936494779, "time": 128, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7461348089" }, { "job": 79936494784, "time": 114, "config": "linux-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7461346711" }, { "job": 79936494776, "time": 125, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7461347710" }, { "job": 79936494774, "time": 172, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7461350074" }, { "job": 79936494773, "time": 250, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "7461359575" }, { "job": 79936494765, "time": 129, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7461345208" }, { "job": 79936494775, "time": 195, "config": "macos-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7461353892" }, { "job": 79936333266, "time": 170, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7461332710" }, { "job": 79936494761, "time": 106, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7461345200" }, { "job": 79936494758, "time": 143, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7461349774" }, { "job": 79936494760, "time": 89, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7461343260" }, { "job": 79936494749, "time": 97, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7461344449" } ], "_buildurl": "https://github.com/r-universe/phiala/actions/runs/27084557666", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/phiala/ecodist", "_commit": { "id": "aeac5854276f3a08d6cdb9b12e7183f3ef96c05b", "author": "Sarah Goslee <32748053+SarahGoslee-USDA@users.noreply.github.com>", "committer": "GitHub ", "message": "Minor update to documentation.", "time": 1698671772 }, "_maintainer": { "name": "Sarah Goslee", "email": "sarah.goslee@usda.gov", "login": "sarahgoslee-usda", "description": "Research ecologist for the USDA-ARS. R, automation, multivariate and spatial statistics, landscapes.", "uuid": 32748053 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.0.0", "role": "Depends" }, { "package": "stats", "role": "Imports" }, { "package": "graphics", "role": "Imports" }, { "package": "igraph", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "testthat", "role": "Suggests" }, { "package": "markdown", "role": "Suggests" } ], "_owner": "phiala", "_selfowned": true, "_usedby": 13, "_updates": [], "_tags": [], "_stars": 9, "_contributors": [ { "user": "sarahgoslee-usda", "count": 34, "uuid": 32748053 }, { "user": "phiala", "count": 20, "uuid": 3706266 }, { "user": "kguidonimartins", "count": 1, "uuid": 8163542 } ], "_userbio": { "uuid": 3706266, "type": "user", "name": "Sarah Goslee", "description": "Ecologist." }, "_downloads": { "count": 7172, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/ecodist" }, "_devurl": "https://github.com/phiala/ecodist", "_searchresults": 793, "_topics": [ "openblas" ], "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/ecodist.html", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/phiala/ecodist", "_realowner": "phiala", "_cranurl": true, "_releases": [ { "version": "1.00", "date": "2006-04-09" }, { "version": "1.01", "date": "2006-04-11" }, { "version": "1.1.0", "date": "2007-05-01" }, { "version": "1.1.2", "date": "2007-06-11" }, { "version": "1.1.3", "date": "2007-10-07" }, { "version": "1.1.5", "date": "2008-09-09" }, { "version": "1.2.1", "date": "2008-09-10" }, { "version": "1.2.2", "date": "2008-12-15" }, { "version": "1.2.3", "date": "2010-04-29" }, { "version": "1.2.5", "date": "2011-09-29" }, { "version": "1.2.7", "date": "2012-03-22" }, { "version": "1.2.9", "date": "2013-12-03" }, { "version": "2.0.1", "date": "2017-07-13" }, { "version": "2.0.3", "date": "2019-12-19" }, { "version": "2.0.5", "date": "2020-04-07" }, { "version": "2.0.7", "date": "2020-08-28" }, { "version": "2.0.9", "date": "2022-05-05" }, { "version": "2.1.3", "date": "2023-10-30" } ], "_exports": [ "addord", "bcdist", "cor2m", "corgen", "crosstab", "distance", "fixdmat", "full", "lower", "mantel", "mgram", "mgroup", "min.nmds", "MRM", "nmds", "nmds.min", "pathdist", "pco", "plot.mgram", "plot.nmds", "plot.vf", "pmgram", "relrange", "residuals.mgram", "rotate2d", "vf", "xdistance", "xmantel", "xmgram" ], "_datasets": [ { "name": "bump", "title": "Nine-bump spatial pattern", "object": "bump", "class": [ "matrix", "array" ], "fields": [ "V1", "V3", "V5", "V7", "V9", "V11", "V13", "V15", "V17", "V19", "V21", "V23", "V25", "V27", "V29", "V31", "V33", "V35", "V37", "V39", "V41", "V43", "V45", "V47", "V49" ], "rows": 25, "table": true, "tojson": true }, { "name": "bump.pmgram", "title": "Nine-bump spatial pattern", "object": "bump.pmgram", "class": [ "mgram" ], "fields": [], "table": false, "tojson": false }, { "name": "graze", "title": "Site information and grazed vegetation data.", "object": "graze", "class": [ "data.frame" ], "fields": [ "sitelocation", "forestpct", "ACMI2", "ANOD", "ASSY", "BRIN2", "CIAR4", "CIIN", "CIVU", "DAGL", "ELRE4", "GAMO", "LOAR10", "LOCO6", "LOPE", "OXST", "PLMA2", "POPR", "PRVU", "RAAC3", "RUCR", "SORU2", "STGR", "TAOF", "TRPR2", "TRRE3", "VEOF2" ], "rows": 50, "table": true, "tojson": true }, { "name": "iris.fit", "title": "Example of adding to an ordination", "object": "iris.fit", "class": [ "list" ], "fields": [], "table": false, "tojson": true }, { "name": "iris.nmds", "title": "Example for nmds", "object": "iris.nmds", "class": [ "nmds" ], "fields": [], "table": false, "tojson": false }, { "name": "iris.vf", "title": "Example for vector fitting on ordination", "object": "iris.vf", "class": [ "vf" ], "fields": [ "1", "2", "r", "pval" ], "rows": 4, "table": false, "tojson": false }, { "name": "iris.vfrot", "title": "Example for vector fitting on rotated ordination", "object": "iris.vfrot", "class": [ "vf" ], "fields": [ "1", "2", "r", "pval" ], "rows": 4, "table": false, "tojson": false }, { "name": "z.no", "title": "Example for pmgram", "object": "z.no", "class": [ "mgram" ], "fields": [], "table": false, "tojson": false }, { "name": "z.z1", "title": "Example for pmgram", "object": "z.z1", "class": [ "mgram" ], "fields": [], "table": false, "tojson": false } ], "_help": [ { "page": "ecodist-package", "title": "Dissimilarity-Based Functions for Ecological Analysis", "topics": [ "ecodist-package", "ecodist" ] }, { "page": "addord", "title": "Fit new points to an existing NMDS configuration.", "topics": [ "addord" ] }, { "page": "bcdist", "title": "Bray-Curtis distance", "topics": [ "bcdist" ] }, { "page": "bump", "title": "Nine-bump spatial pattern", "topics": [ "bump" ] }, { "page": "bump.pmgram", "title": "Nine-bump spatial pattern", "topics": [ "bump.pmgram" ] }, { "page": "cor2m", "title": "Two-matrix correlation table", "topics": [ "cor2m" ] }, { "page": "corgen", "title": "Generate correlated data", "topics": [ "corgen" ] }, { "page": "crosstab", "title": "Data formatting", "topics": [ "crosstab" ] }, { "page": "dim.dist", "title": "Dimension of a distance object", "topics": [ "dim.dist" ] }, { "page": "distance", "title": "Calculate dissimilarity/distance metrics", "topics": [ "distance" ] }, { "page": "fixdmat", "title": "Distance matrix conversion", "topics": [ "fixdmat" ] }, { "page": "full", "title": "Full symmetric matrix", "topics": [ "full" ] }, { "page": "graze", "title": "Site information and grazed vegetation data.", "topics": [ "graze" ] }, { "page": "iris.fit", "title": "Example of adding to an ordination", "topics": [ "iris.fit" ] }, { "page": "iris.nmds", "title": "Example for nmds", "topics": [ "iris.nmds" ] }, { "page": "iris.vf", "title": "Example for vector fitting on ordination", "topics": [ "iris.vf" ] }, { "page": "iris.vfrot", "title": "Example for vector fitting on rotated ordination", "topics": [ "iris.vfrot" ] }, { "page": "lower", "title": "Lower-triangular matrix", "topics": [ "lower" ] }, { "page": "mantel", "title": "Mantel test", "topics": [ "mantel" ] }, { "page": "mgram", "title": "Mantel correlogram", "topics": [ "mgram" ] }, { "page": "mgroup", "title": "Mantel test for groups", "topics": [ "mgroup" ] }, { "page": "min.nmds", "title": "Find minimum stress configuration", "topics": [ "min.nmds", "nmds.min" ] }, { "page": "MRM", "title": "Multiple Regression on distance Matrices", "topics": [ "MRM" ] }, { "page": "nmds", "title": "Non-metric multidimensional scaling", "topics": [ "nmds" ] }, { "page": "pathdist", "title": "Graph extension of dissimilarities", "topics": [ "pathdist" ] }, { "page": "pco", "title": "Principal coordinates analysis", "topics": [ "pco" ] }, { "page": "plot.mgram", "title": "Plot a Mantel correlogram", "topics": [ "plot.mgram" ] }, { "page": "plot.nmds", "title": "Plot information about NMDS ordination", "topics": [ "plot.nmds" ] }, { "page": "plot.vf", "title": "Plots fitted vectors onto an ordination diagram", "topics": [ "plot.vf" ] }, { "page": "pmgram", "title": "Piecewise multivariate correlogram", "topics": [ "pmgram" ] }, { "page": "relrange", "title": "Relativize a compositional data matrix.", "topics": [ "relrange" ] }, { "page": "residuals.mgram", "title": "Residuals of a Mantel correlogram", "topics": [ "residuals.mgram" ] }, { "page": "rotate2d", "title": "Rotate a 2D ordination.", "topics": [ "rotate2d" ] }, { "page": "vf", "title": "Vector fitting", "topics": [ "vf" ] }, { "page": "xdistance", "title": "Cross-distance between two datasets.", "topics": [ "xdistance" ] }, { "page": "xmantel", "title": "Cross-Mantel test", "topics": [ "xmantel" ] }, { "page": "xmgram", "title": "Cross-Mantel correlogram", "topics": [ "xmgram" ] }, { "page": "z.no", "title": "Example for pmgram", "topics": [ "z.no" ] }, { "page": "z.z1", "title": "Example for pmgram", "topics": [ "z.z1" ] } ], "_readme": "https://github.com/phiala/ecodist/raw/HEAD/README.md", "_rundeps": [ "cli", "cpp11", "glue", "igraph", "lattice", "lifecycle", "magrittr", "Matrix", "pkgconfig", "rlang", "vctrs" ], "_sysdeps": [ { "shlib": "libblas", "package": "libopenblas0-pthread", "source": "openblas", "version": "0.3.26+ds-1ubuntu0.1", "name": "openblas", "homepage": "https://www.openblas.net/", "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)" } ], "_vignettes": [ { "source": "dissimilarity.Rmd", "filename": "dissimilarity.html", "title": "Dissimilarity Cheat Sheet", "author": "Sarah Goslee", "engine": "knitr::rmarkdown", "headings": [], "created": "2017-07-07 23:25:29", "modified": "2023-08-04 21:09:41", "commits": 3 } ], "_score": 9.300220584673575, "_indexed": true, "_nocasepkg": "ecodist", "_universes": [ "phiala", "sarahgoslee-usda" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "2.1.3", "date": "2026-06-07T06:13:23.000Z", "distro": "noble", "arch": "aarch64", "commit": "aeac5854276f3a08d6cdb9b12e7183f3ef96c05b", "fileid": "feab6343ab68c0bc0ab56a125796ce122d11cbf2dae61b828a35fb85db0764b2", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/phiala/actions/runs/27084557666" }, { "r": "4.7.0", "os": "linux", "version": "2.1.3", "date": "2026-06-07T06:13:21.000Z", "distro": "noble", "arch": "x86_64", "commit": "aeac5854276f3a08d6cdb9b12e7183f3ef96c05b", "fileid": "ae3b8f10078cecced64c07d8ee8b3ba98f3904d6f188a15b89151118eb043088", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/phiala/actions/runs/27084557666" }, { "r": "4.6.0", "os": "linux", "version": "2.1.3", "date": "2026-06-07T06:13:18.000Z", "distro": "noble", "arch": "aarch64", "commit": "aeac5854276f3a08d6cdb9b12e7183f3ef96c05b", "fileid": "6d9672965eaa84fbe7b5b4003c45358613d841b55c36fb65131d0a3510e82060", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/phiala/actions/runs/27084557666" }, { "r": "4.6.0", "os": "linux", "version": "2.1.3", "date": "2026-06-07T06:13:19.000Z", "distro": "noble", "arch": "x86_64", "commit": "aeac5854276f3a08d6cdb9b12e7183f3ef96c05b", "fileid": "908002425bbb506e77e59a628406dd78d3eb379322a90637cfddc347619ef39e", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/phiala/actions/runs/27084557666" }, { "r": "4.5.3", "os": "mac", "version": "2.1.3", "date": "2026-06-07T06:13:44.000Z", "arch": "aarch64", "commit": "aeac5854276f3a08d6cdb9b12e7183f3ef96c05b", "fileid": "2fa43ffe26567ba37bcf7e69794beb72395d44820034158cfe06f550d3f4efe5", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/phiala/actions/runs/27084557666" }, { "r": "4.5.3", "os": "mac", "version": "2.1.3", "date": "2026-06-07T06:14:50.000Z", "arch": "x86_64", "commit": "aeac5854276f3a08d6cdb9b12e7183f3ef96c05b", "fileid": "ffd666a8c5ad0d351ccd99b962690b3d9abeb2bd02cc6171ad765f969a07ca3d", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/phiala/actions/runs/27084557666" }, { "r": "4.6.0", "os": "mac", "version": "2.1.3", "date": "2026-06-07T06:13:06.000Z", "arch": "aarch64", "commit": "aeac5854276f3a08d6cdb9b12e7183f3ef96c05b", "fileid": "024f345a42382f522412504fffec4932d1c8d5e6054155b7476683eb7c8c2f42", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/phiala/actions/runs/27084557666" }, { "r": "4.6.0", "os": "mac", "version": "2.1.3", "date": "2026-06-07T06:14:04.000Z", "arch": "x86_64", "commit": "aeac5854276f3a08d6cdb9b12e7183f3ef96c05b", "fileid": "f0d2d2e91565929ddd31fb3da56f153a0f95b662f9993394a1c262f18228c6f2", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/phiala/actions/runs/27084557666" }, { "r": "4.6.0", "os": "wasm", "version": "2.1.3", "date": "2026-06-07T06:13:20.000Z", "arch": "emscripten", "commit": "aeac5854276f3a08d6cdb9b12e7183f3ef96c05b", "fileid": "1519d36334d04d2fa8a2bdfe20938155083c012aad4ff7825937770843097bb3", "status": "success", "buildurl": "https://github.com/r-universe/phiala/actions/runs/27084557666" }, { "r": "4.7.0", "os": "win", "version": "2.1.3", "date": "2026-06-07T06:12:57.000Z", "arch": "x86_64", "commit": "aeac5854276f3a08d6cdb9b12e7183f3ef96c05b", "fileid": "dc824ef2d585b099960fdf27e3aaa0b9d2c19f892a9020abdc602d3132e99f2a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/phiala/actions/runs/27084557666" }, { "r": "4.5.3", "os": "win", "version": "2.1.3", "date": "2026-06-07T06:12:29.000Z", "arch": "x86_64", "commit": "aeac5854276f3a08d6cdb9b12e7183f3ef96c05b", "fileid": "53de3cdfda32aef07a017fb65b68ed66b58be4707cd4379411bba39ed8d50a45", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/phiala/actions/runs/27084557666" }, { "r": "4.6.0", "os": "win", "version": "2.1.3", "date": "2026-06-07T06:12:41.000Z", "arch": "x86_64", "commit": "aeac5854276f3a08d6cdb9b12e7183f3ef96c05b", "fileid": "9a7e7f6967261a7a7df44188f3aa8d5d628045a9a4443d4b960368b0b087015a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/phiala/actions/runs/27084557666" } ] }